HOEHNDORF, ROBERT: search on Z-Library

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1

Data Science and symbolic AI: Synergies, challenges and opportunities

Hoehndorf, Robert, Queralt-Rosinach, Núria, Kuhn, Tobias

Journal:

Year:

2017

Language:

english

File:

PDF, 215 KB

english, 2017

2

Text-mining solutions for biomedical research: enabling integrative biology

Rebholz-Schuhmann, Dietrich, Oellrich, Anika, Hoehndorf, Robert

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

3

Taxon and trait recognition from digitized herbarium specimens using deep convolutional neural networks

Younis, Sohaib, Weiland, Claus, Hoehndorf, Robert, Dressler, Stefan, Hickler, Thomas, Seeger, Bernhard, Schmidt, Marco

Journal:

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

4

Collecting, exploring and sharing personal data: Why, how and where

Estrada-Galiñanes, Vero, Wac, Katarzyna, Hoehndorf, Robert

Journal:

Year:

2019

Language:

english

File:

PDF, 1.18 MB

english, 2019

5

Neuro-symbolic representation learning on biological knowledge graphs

Alshahrani, Mona, Khan, Mohammed Asif, Maddouri, Omar, Kinjo, Akira R, Queralt-Rosinach, Núria, Hoehndorf, Robert

Journal:

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

6

DDIEM: drug database for inborn errors of metabolism

Abdelhakim, Marwa, McMurray, Eunice, Syed, Ali Raza, Kafkas, Senay, Kamau, Allan Anthony, Schofield, Paul N, Hoehndorf, Robert

Journal:

Orphanet Journal of Rare Diseases

Year:

2020

File:

PDF, 1.56 MB

2020

7

Inferring ontology graph structures using OWL reasoning

Rodríguez-García, Miguel Ángel, Hoehndorf, Robert

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 998 KB

english, 2018

8

OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction

Smaili, Fatima Zohra, Gao, Xin, Hoehndorf, Robert, Wren, Jonathan

Journal:

Year:

2018

Language:

english

File:

PDF, 374 KB

english, 2018

9

[ACM Press The World Wide Web Conference - San Francisco, CA, USA (2019.05.13-2019.05.17)] The World Wide Web Conference on - WWW '19 - Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference

Pei, Shichao, Yu, Lu, Hoehndorf, Robert, Zhang, Xiangliang

Year:

2019

Language:

english

File:

PDF, 999 KB

english, 2019

10

Collecting, exploring and sharing personal data: Why, how and where

Estrada-Galiñanes, Vero, Wac, Katarzyna, Hoehndorf, Robert

Journal:

Year:

2019

File:

PDF, 1.18 MB

2019

11

Ontology based text mining of gene-phenotype associations: application to candidate gene prediction

Kafkas, Şenay, Hoehndorf, Robert

Journal:

Year:

2019

Language:

english

File:

PDF, 2.06 MB

english, 2019

12

Predicting Candidate Genes From Phenotypes, Functions, And Anatomical Site Of Expression

Chen, Jun, Althagafi, Azza, Hoehndorf, Robert, Robinson, Peter

Journal:

Year:

2020

File:

PDF, 313 KB

2020

13

Integrating phenotype ontologies with PhenomeNET

Rodríguez-García, Miguel Ángel, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert

Journal:

Journal of Biomedical Semantics

Year:

2017

Language:

english

File:

PDF, 721 KB

english, 2017

14

Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations

Smaili, Fatima Zohra, Gao, Xin, Hoehndorf, Robert

Journal:

Year:

2018

Language:

english

File:

PDF, 515 KB

english, 2018

15

[ACM Press The World Wide Web Conference - San Francisco, CA, USA (2019.05.13-2019.05.17)] The World Wide Web Conference on - WWW '19 - Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference

Pei, Shichao, Yu, Lu, Hoehndorf, Robert, Zhang, Xiangliang

Year:

2019

File:

PDF, 999 KB

2019

16

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL

Simon Jupp, Robert Stevens, Robert Hoehndorf

Journal:

Journal of Biomedical Semantics

Year:

2012

Language:

english

File:

PDF, 561 KB

english, 2012

17

DermO; an ontology for the description of dermatologic disease

Fisher, Hannah M., Hoehndorf, Robert, Bazelato, Bruno S., Dadras, Soheil S., King, Lloyd E., Gkoutos, Georgios V., Sundberg, John P., Schofield, Paul N.

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

18

Evaluating the effect of annotation size on measures of semantic similarity

Maxat Kulmanov,Robert Hoehndorf

Journal:

Journal of Biomedical Semantics

Year:

2017

Language:

english

File:

PDF, 1.11 MB

english, 2017

19

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species

Salhi, Adil, Negrão, Sónia, Essack, Magbubah, Morton, Mitchell J. L., Bougouffa, Salim, Razali, Rozaimi, Radovanovic, Aleksandar, Marchand, Benoit, Kulmanov, Maxat, Hoehndorf, Robert, Tester, Mark, Ba

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.39 MB

english, 2017

20

Statistical Tests for Associations between Two Directed Acyclic Graphs

Hoehndorf, Robert, Ngonga Ngomo, Axel-Cyrille, Dannemann, Michael, Kelso, Janet, Rapallo, Fabio

Journal:

Year:

2010

Language:

english

File:

PDF, 210 KB

english, 2010

21

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology

Robert Hoehndorf, Joshua Bacher, Michael Backhaus, Sergio E Gregorio, Frank Loebe, Kay Prüfer, Alexandr Uciteli, Johann Visagie, Heinrich Herre, Janet Kelso

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 603 KB

english, 2009

22

Representing physiological processes and their participants with PhysioMaps

Daniel L Cook, Maxwell L Neal, Robert Hoehndorf…

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 392 KB

english, 2013

23

Best behaviour? Ontologies and the formal description of animal behaviour

Gkoutos, Georgios V., Hoehndorf, Robert, Tsaprouni, Loukia, Schofield, Paul N.

Journal:

Mammalian Genome

Year:

2015

Language:

english

File:

PDF, 395 KB

english, 2015

24

DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier

Kulmanov, Maxat, Khan, Mohammed Asif, Hoehndorf, Robert

Journal:

Year:

2017

Language:

english

File:

PDF, 497 KB

english, 2017

25

Thematic series on biomedical ontologies in JBMS: challenges and new directions

Hoehndorf, Robert, Haendel, Melissa, Stevens, Robert, Rebholz-Schuhmann, Dietrich

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 287 KB

english, 2014

26

Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions

Hoehndorf, Robert, Hardy, Nigel W., Osumi-Sutherland, David, Tweedie, Susan, Schofield, Paul N., Gkoutos, Georgios V., Torkamani, Ali

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

27

Combining lexical and context features for automatic ontology extension

Althubaiti, Sara, Kafkas, Åenay, Abdelhakim, Marwa, Hoehndorf, Robert

Journal:

Journal of Biomedical Semantics

Year:

2020

File:

PDF, 1.90 MB

2020

28

OBML – Ontologies in Biomedicine and Life Sciences

Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe, Stefan Schulz

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 224 KB

english, 2011

29

Production location of the gelling agent Phytagel has a significant impact on Arabidopsis thalianaÂ seedling phenotypic analysis

Jacques, Caitlin N., Hulbert, Anna K., Westenskow, Shelby, Neff, Michael M., Hoehndorf, Robert

Journal:

Year:

2020

File:

PDF, 1.92 MB

2020

30

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

Smaili, Fatima Zohra, Gao, Xin, Hoehndorf, Robert, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 1.81 MB

2020

31

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies

Robert Hoehndorf, Frank Loebe, Janet Kelso, Heinrich Herre

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 537 KB

english, 2007

32

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Hoehndorf, Robert, Dumontier, Michel, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Schofield, Paul N., Gkoutos, Georgios V., Androulakis, Ioannis P.

Journal:

Year:

2011

Language:

english

File:

PDF, 387 KB

english, 2011

33

Hyaline Arteriolosclerosis in 30 Strains of Aged Inbred Mice

Cooper, Timothy K., Silva, Kathleen A., Kennedy, Victoria E., Alghamdi, Sarah, Hoehndorf, Robert, Sundberg, Beth A., Schofield, Paul N., Sundberg, John P.

Journal:

Veterinary Pathology

Year:

2019

Language:

english

File:

PDF, 1.08 MB

english, 2019

34

A Formal Ontology of Sequences

Hoehndorf, Robert, Kelso, Janet, Herre, Heinrich

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 82 KB

english, 2009

35

The ontology of biological sequences

Robert Hoehndorf, Janet Kelso, Heinrich Herre

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 974 KB

english, 2009

36

Mouse genetic and phenotypic resources for human genetics

Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos

Journal:

Year:

2012

Language:

english

File:

PDF, 352 KB

english, 2012

37

Applying the functional abnormality ontology pattern to anatomical functions

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Janet Kelso

Journal:

Journal of Biomedical Semantics

Year:

2010

Language:

english

File:

PDF, 650 KB

english, 2010

38

Ontology design patterns to disambiguate relations between genes and gene products in GENIA

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 460 KB

english, 2011

39

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria

Motwalli, Olaa, Essack, Magbubah, Jankovic, Boris R., Ji, Boyang, Liu, Xinyao, Ansari, Hifzur Rahman, Hoehndorf, Robert, Gao, Xin, Arold, Stefan T., Mineta, Katsuhiko, Archer, John A. C., Gojobori, Ta

Journal:

Year:

2017

Language:

english

File:

PDF, 3.03 MB

english, 2017

40

Evaluation and Cross-Comparison of Lexical Entities of Biological Interest (LexEBI)

Rebholz-Schuhmann, Dietrich, Kim, Jee-Hyub, Yan, Ying, Dixit, Abhishek, Friteyre, Caroline, Hoehndorf, Robert, Backofen, Rolf, Lewin, Ian, Smalheiser, Neil R.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

41

Notions of similarity for systems biology models

Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 35 KB

english, 2017

42

Nail abnormalities identified in an ageing study of 30 inbred mouse strains

Linn, Sarah C., Mustonen, Allison M., Silva, Kathleen A., Kennedy, Victoria E., Sundberg, Beth A., Bechtold, Lesley S., Alghamdi, Sarah, Hoehndorf, Robert, Schofield, Paul N., Sundberg, John P.

Journal:

Experimental Dermatology

Year:

2018

Language:

english

File:

PDF, 918 KB

english, 2018

43

Integrating systems biology models and biomedical ontologies

Robert Hoehndorf, Michel Dumontier, John H Gennari, Sarala Wimalaratne, Bernard de Bono, Daniel L Cook, Georgios V Gkoutos

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 399 KB

english, 2011

44

Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Oellrich, Anika, Hoehndorf, Robert, Gkoutos, Georgios V., Rebholz-Schuhmann, Dietrich, Schuelke, Markus

Journal:

Year:

2012

Language:

english

File:

PDF, 2.10 MB

english, 2012

45

All of gene expression (AOE): An integrated index for public gene expression databases

Bono, Hidemasa, Hoehndorf, Robert

Journal:

Year:

2020

Language:

english

File:

PDF, 1.87 MB

english, 2020

46

Computational tools for comparative phenomics: the role and promise of ontologies

Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Journal:

Mammalian Genome

Year:

2012

Language:

english

File:

PDF, 332 KB

english, 2012

47

Aber-OWL: a framework for ontology-based data access in biology

Hoehndorf, Robert, Slater, Luke, Schofield, Paul N, Gkoutos, Georgios V

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 799 KB

english, 2015

48

An ontology approach to comparative phenomics in plants

Oellrich, Anika, Walls, Ramona L, Cannon, Ethalinda, Cannon, Steven B, Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V, Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scot

Journal:

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

49

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

Hoehndorf, Robert, Schofield, Paul N., Gkoutos, Georgios V.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 2.68 MB

english, 2015

50

A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets

Ayllón-Benítez, Aarón, Mougin, Fleur, Allali, Julien, Thiébaut, Rodolphe, Thébault, Patricia, Hoehndorf, Robert

Journal:

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

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